Proteomics Informatics Course
The Seattle Proteome Center (SPC) at ISB offers intensive courses in the use of our suite of open-source software tools designed for the analysis, validation, storage and interpretation of data obtained from large-scale quantitative proteomics experiments and methods, multi-dimensional chromatography and tandem mass spectrometry. Through daily lectures and tutorials, each course participant should become proficient in the use of these tools, which comprise the Trans-Proteomic Pipeline (TPP). More information on the TPP, including software downloads can be found on the TPP Wiki page.
The Course also includes instruction on using SPC resources such as PeptideAtlas, SRMAtlas, and related tools for design of targeted proteomics workflows via selected reaction monitoring (SRM/MRM).